Integrating Tools from Outside Galaxy

Some Unsorted Notes

Velvet

If you plan to build Oases, you may wish to symlink the Velvet directory. For example:

ln -s velvet_1.2.08 velvet

Trinity

If you plan to build Trinity, you will probably want to place the directory as a sibling of the galaxy-dist directory and symlink it as follows:

ln -s trinityrnaseq_r2012-10-05 trinityrnaseq

The example tools expect to find Trinity.pl there.

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